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Title

Authors

2019

Collection

Reference

Test-retest Reproducibility of White Matter Parcellation using Diffusion MRI Tractography Fiber Clustering [New]

Zhang F., Wu Y., Norton I., Rathi Y., Golby A.J., O'Donnell L.J.

Jul-2019

NAC, NCIGT, SPL

Hum Brain Mapp. 2019 Jul;40(10):3041-57.

Searching for the Neurite Density with Diffusion MRI: Challenges for Biophysical Modeling [New]

Lampinen B., Szczepankiewicz F., Novén M., van Westen D., Hansson O., Englund E., Mårtensson J., Westin C-F., Nilsson M.

Jun-2019

NAC, LMI, NCIGT, SPL

Hum Brain Mapp. 2019 Jun 1;40(8):2529-45.

Limbic System Structure Volumes and Associated Neurocognitive Functioning in Former NFL Players [New]

Lepage C., Muehlmann M., Tripodis Y., Hufschmidt J., Stamm J., Green K., Wrobel P., Schultz V., Weir I., Alosco M.L., Baugh C.M., Fritts N.G., Martin B.M., Chaisson C., Coleman M.J., Lin A.P., Pasternak O., Makris N., Stern R.A., Shenton M.E., Koerte I.K.

Jun-2019

NAC, PNL

Brain Imaging Behav. 2019 Jun;13(3):725-34.

Analyzing Brain Morphology on the Bag-of-Features Manifold [New]

Chauvin L., Kumar K., De Guise J., Wells III. W.M., Toews M.

Jun-2019

NAC, SPL

Inf Process Med Imaging. 2019 Jun;11492:45-56.

Functional MRI Task Comparison for Language Mapping in Neurosurgical Patients

Unadkat P., Fumagalli L., Rigolo L., Vangel M.G., Young G.S., Huang R., Mukundan S., Golby A., Tie Y.

May-2019

NCIGT

J Neuroimaging. 2019 May;29(3):348-56.

Genome-Wide Interrogation of Human Cancers Identifies EGLN1 Dependency in Clear Cell Ovarian Cancers

Price C., Gill S., Ho Z.V., Davidson S.M., Merkel E., McFarland J.M., Leung L., Tang A., Kost-Alimova M., Tsherniak A., Jonas O., Vazquez F., Hahn W.C.

May-2019

NCIGT

Cancer Res. 2019 May 15;79(10):2564-79.

Estimation of Diffusion, Perfusion and Fractional Volumes using a Multi-compartment Relaxation-compensated Intravoxel Incoherent Motion (IVIM) Signal Model

Rydhög A., Pasternak O., Ståhlberg F., Ahlgren A., Knutsson L., Wirestam R.

May-2019

NAC

Eur J Radiol Open. 2019; 6: 198–205.

Dynamic Three-Dimensional Geometry of the Tricuspid Valve Annulus in Hypoplastic Left Heart Syndrome with a Fontan Circulation

Nguyen A.V., Lasso A., Nam H.H., Faerber J., Aly A.H., Pouch A.M., Scanlan A.B., McGowan F.X., Mercer-Rosa L., Cohen M.S., Simpson J., Fichtinger G., Jolley M.A.

May-2019

NAC, SPL

J Am Soc Echocardiogr. 2019 May;32(5):655-66.

Maxwell-compensated Design of Asymmetric Gradient Waveforms for Tensor-valued Diffusion Encoding

Szczepankiewicz F., Westin C-F., Nilsson M.

May-2019

NAC, LMI, SPL

Magn Reson Med. 2019 May 31.

Amyloid Burden Accelerates White Matter Degradation in Cognitively Normal Elderly Individuals

Vipin A., Ng K.K., Ji F., Shim H.Y., Lim J.K.W., Pasternak O., Zhou J.H.

May-2019

NAC, LMI, PNL, SPL

Hum Brain Mapp. 2019 May;40(7):2065-75.

Molecular Characterization of Prostate Cancer with Associated Gleason Score using Mass Spectrometry Imaging

Randall E.C., Zadra G., Chetta P., Lopez B.G.C., Syamala S., Basu S.S., Agar J.N., Loda M., Tempany C.M., Fennessy F.M., Agar N.Y.R.

May-2019

NCIGT, SPL

Mol Cancer Res. 2019 May;17(5):1155-65.

Accelerated Segmented Diffusion-Weighted Prostate Imaging for Higher Resolution, Higher Geometric Fidelity, and Multi-b Perfusion Estimation

Aksit Ciris P., Chiou J-Y.G., Glazer D.I., Chao T-C., Tempany-Afdhal C.M., Madore B., Maier S.E.

Apr-2019

NCIGT

Invest Radiol. 2019 Apr;54(4):238-46.

Continuum Robot with Follow the Leader Motion for Endoscopic Third Ventriculostomy and Tumor Biopsy

Gao Y., Takagi K., Kato T., Shono N., Hata N.

Apr-2019

NCIGT

IEEE Trans Biomed Eng. 2019 Apr 29.

Investigating the Role of DCE-MRI, over T2 and DWI, in accurate PI-RADS v2 Assessment of Clinically Significant Peripheral Zone Prostate Lesions as Defined at Radical Prostatectomy

Taghipour M., Ziaei A., Alessandrino F., Hassanzadeh E., Harisinghani M., Vangel M., Tempany C.M., Fennessy F.M.

Apr-2019

NCIGT, SPL

Abdom Radiol (NY). 2019 Apr;44(4):1520-7.

Advances in Computational and Statistical Diffusion MRI

O'Donnell L.J., Daducci A., Wassermann D., Lenglet C.

Apr-2019

NCIGT, NAC

NMR Biomed. 2019 Apr;32(4):e3805.

Automatic Needle Segmentation and Localization in MRI with 3D Convolutional Neural Networks: Application to MRI-targeted Prostate Biopsy

Mehrtash A., Ghafoorian M., Pernelle G., Ziaei A., Heslinga F.G., Tuncali K., Fedorov A., Kikinis R., Tempany C.M., Wells W.M., Abolmaesumi P., Kapur T.

Apr-2019

NCIGT, SPL

IEEE Trans Med Imaging. 2019 Apr;38(4):1026-36.

MK-curve - Characterizing the Relation between Mean Kurtosis and Alterations in the Diffusion MRI Signal

Zhang F., Ning L., O'Donnell L.J., Pasternak O.

Apr-2019

NAC, LMI, NA-MIC, SPL

Neuroimage. 2019 Apr 10;196:68-80.

Genetically Encoded Fluorescent Proteins Enable High-Throughput Assignment of Cell Cohorts Directly from MALDI-MS Images

Schmitt N.D., Rawlins C.M., Randall E.C., Wang X., Koller A., Auclair J.R., Kowalski J-M., Kowalski P.J., Luther E., Ivanov A.R., Agar N.Y.R., Agar J.N.

Mar-2019

NCIGT

Anal Chem. 2019 Mar 19;91(6):3810-7.

The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge, Part II

Huang W., Chen Y., Fedorov A., Li X., Jajamovich G.H., Malyarenko D.I., Aryal M.P., LaViolette P.S., Oborski M.J., O'Sullivan F., Abramson R.G., Jafari-Khouzani K., Afzal A., Tudorica A., Moloney B., Gupta S.N., Besa C., Kalpathy-Cramer J., Mountz J.M., Laymon C.M., Muzi M., Kinahan P.E., Schmainda K., Cao Y., Chenevert T.L., Taouli B., Yankeelov T.E., Fennessy F., Li X.

Mar-2019

SPL

Tomography. 2019 Mar;5(1):99-109.

Uncertainty-aware Asynchronous Scattered Motion Interpolation using Gaussian Process Regression

Kocev B., Hahn H.K., Linsend L., Wells III W.M., Kikinis R.

Mar-2019

NAC, NCIGT

Comput Med Imaging Graph. 2019 Mar;72:1-12.

Effect of Region of Interest Size on the Repeatability of Quantitative Brain Imaging Biomarkers

Jafari-Khouzani K., Paynabar K., Hajighasemi F., Rosen B.

Mar-2019

NAC

IEEE Trans Biomed Eng. 2019 Mar;66(3):864-72.

Orientationally-averaged Diffusion-attenuated Magnetic Resonance Signal for Locally-anisotropic Diffusion

Herberthson M., Yolcu C., Knutsson H., Westin C-F., Özarslan E.

Mar-2019

NAC, LMI

Sci Rep. 2019 Mar 20;9(1):4899.

Impact of Aeration Change and Beam Arrangement on the Robustness of Proton Plans

Shusharina N., Fullerton B., Adams J.A., Sharp G.C., Chan A.W.

Mar-2019

NAC, NA-MIC, SPL

J Appl Clin Med Phys. 2019 Mar;20(3):14-21.

Quantitative Tract-based White Matter Heritability in 1- and 2-year-old Twins

Lee S.J., Zhang J., Neale M.C., Styner M., Zhu H., Gilmore J.H.

Mar-2019

NA-MIC

Hum Brain Mapp. 2019 Mar;40(4):1164-73.

Multipathway Multi-echo (MPME) Imaging: All Main MR Parameters Mapped Based on a Single 3D Scan

Cheng C-C., Preiswerk F., Hoge W.S., Kuo T-H., Madore B.

Mar-2019

NCIGT

Magn Reson Med. 2019 Mar;81(3):1699-1713.

Automatic and Efficient MRI-US Segmentations for Improving Intraoperative Image Fusion in Image-guided Neurosurgery

Nitsch J., Klein J., Dammann P., Wrede K., Gembruch O., Moltz J.H., Meine H., Sure U., Kikinis R., Miller D.

Mar-2019

NAC, NCIGT, SPL

Neuroimage Clin. 2019; 22: 101766.

White Matter Correlates of Mild Traumatic Brain Injuries in Women Subjected to Intimate-Partner Violence: A Preliminary Study

Valera E.M., Cao A., Pasternak O., Shenton M.E., Kubicki M., Makris N., Adra N.

Mar-2019

NAC, PNL, SPL

J Neurotrauma. 2019 Mar 1;36(5):661-8.

Evaluating the Influence of Prostate-specific Antigen Kinetics on Metastasis in Men with PSA Recurrence after Partial Gland Therapy

King M.T., Nguyen P.L., Boldbaatar N., Yang D.D., Muralidhar V., Tempany C.M., Cormack R.A., Hurwitz M.D., Suh W.W., Pomerantz M.M., D'Amico A.V., Orio P.F.

Mar-2019

NCIGT, SPL

Brachytherapy. 2019 Mar - Apr;18(2):198-203.

Prostate Imaging Reporting and Data System Version 2.1: 2019 Update of Prostate Imaging Reporting and Data System Version 2

Turkbey B., Rosenkrantz A.B., Haider M.A., Padhani A.R., Villeirs G., Macura K.J., Tempany C.M., Choyke P.L., Cornud F., Margolis D.J., Thoeny H.C., Verma S., Barentsz J., Weinreb J.C.

Mar-2019

NCIGT

Eur Urol. 2019 Mar 18.

Polygenic Risk and Neural Substrates of Attention-Deficit/Hyperactivity Disorder Symptoms in Youths With a History of Mild Traumatic Brain Injury

Stojanovski S., Felsky D., Viviano J.D., Shahab S., Bangali R., Burton C.L., Devenyi G.A., O'Donnell L.J., Szatmari P., Chakravarty M.M., Ameis S., Schachar R., Voineskos A.N., Wheeler A.L.

Mar-2019

NAC, NCIGT

Biol Psychiatry. 2019 Mar 1;85(5):408-16.

Artificial Intelligence in Cancer Imaging: Clinical Challenges and Applications

Bi W.L., Hosny A., Schabath M.B., Giger M.L., Birkbak N.J., Mehrtash A., Allison T., Arnaout O., Abbosh C., Dunn I.F., Mak R.H., Tamimi R.M., Tempany C.M., Swanton C., Hoffmann U., Schwartz L.H., Gillies R.J., Huang R.Y., Aerts H.J.W.L.

Mar-2019

NCIGT, SPL

CA Cancer J Clin. 2019 Mar;69(2):127-57.

A Risk-based Approach to Identifying Oligometastatic Disease on Imaging

deSouza N.M., Tempany C.M.

Feb-2019

NCIGT, Prostate Group, SPL

IInt J Cancer. 2019 Feb 1;144(3):422-30.

Toward Predictive Modeling of Catheter-based Pulmonary Valve Replacement into Native Right Ventricular Outflow Tracts

Jolley M.A., Lasso A., Nam H.H., Dinh P.V., Scanlan A.B., Nguyen A.V., Ilina A., Morray B., Glatz A.C., McGowan F.X., Whitehead K., Dori Y., Gorman J.H., Gorman R.C., Fichtinger G., Gillespie M.J.

Feb-2019

NAC

Catheter Cardiovasc Interv. 2019 Feb 15;93(3):E143-E152.

Dispersion in Tissue-Mimicking Gels Measured with Shear Wave Elastography and Torsional Vibration Rheometry

Yengul S.S., Barbone P.E., Madore B.

Feb-2019

NCIGT

Ultrasound Med Biol. 2019 Feb;45(2):586-604.

Neuroimaging Auditory Verbal Hallucinations in Schizophrenia Patient and Healthy Populations

Di Biase M.A., Zhang F., Lyall A., Kubicki M., Mandl R.C.W., Sommer I.E., Pasternak O.

Feb-2019

NAC, SPL

Psychol Med. 2019 Feb 20:1-10.

Preliminary Results Comparing Thin Plate Splines with Finite Element Methods for Modeling Brain Deformation during Neurosurgery using Intraoperative Ultrasound

Frisken S., Luo M., Machado I., Unadkat P., Juvekar P., Bunevicius A., Toews M., Wells III W.M., Miga M.I., Golby A.J.

Feb-2019

NAC, SPL

Proc SPIE Int Soc Opt Eng. 2019 Feb;10951.

Predictive Role of PI-RADSv2 and ADC Parameters in Differentiating Gleason Pattern 3 + 4 and 4 + 3 Prostate Cancer

Alessandrino F., Taghipour M., Hassanzadeh E., Ziaei A., Vangel M., Fedorov A., Tempany C.M., Fennessy F.M.

Jan-2019

NCIGT

Abdom Radiol (NY). 2019 Jan;44(1):279-85.

Title

Authors

2018

Collection

Reference

An Annotated Test-retest Collection of Prostate Multiparametric MRI

Fedorov A., Schwier M., Clunie D., Herz C., Pieper S., Kikinis R., Tempany C., Fennessy F.

Dec-2018

NCIGT, SPL

Sci Data. 2018 Dec 4;5:180281.

Using the Variogram for Vector Outlier Screening: Application to Feature-based Image Registration

Luo J., Frisken S., Machado I., Zhang M., Pieper S., Golland P., Toews M., Unadkat P., Sedghi A., Zhou H., Mehrtash A., Preiswerk F., Cheng C-C., Golby A., Sugiyama M., Wells W.M.

Dec-2018

NAC, NCIGT, SPL

Int J Comput Assist Radiol Surg. 2018 Dec;13(12):1871-80.

Re-examining Age-related Differences in White Matter Microstructure with Free-water Corrected Diffusion Tensor Imaging

Chad J.A., Pasternak O., Salat D.H., Chen J.J.

Nov-2018

NAC, SPL

Neurobiol Aging. 2018 Nov;71:161-70.

Tyrosine Kinase Inhibitors Increase MCL1 Degradation and in Combination with BCLXL/BCL2 Inhibitors Drive Prostate Cancer Apoptosis

Arai S., Jonas O., Whitman M.A., Corey E., Balk S.P., Chen S.

Nov-2018

NCIGT

Clin Cancer Res. 2018 Nov 1;24(21):5458-70.

Integrated Mapping of Pharmacokinetics and Pharmacodynamics in a Patient-derived Xenograft Model of Glioblastoma

Randall E.C., Emdal K.B., Laramy J.K., Kim M., Roos A., Calligaris D., Regan M.S., Gupta S.K., Mladek A.C., Carlson B.L., Johnson A.J., Lu F-K., Xie X.S., Joughin B.A., Reddy R.J., Peng S., Abdelmoula W.M., Jackson P.R., Kolluri A., Kellersberger K.A., Agar J.N., Lauffenburger D.A., Swanson K.R., Tran N.L., Elmquist W.F., White F.M., Sarkaria J.N., Agar N.Y.R.

Nov-2018

NCIGT

Nat Commun. 2018 Nov 21;9(1):4904.

Selection of Fitting Model and Arterial Input Function for Repeatability in Dynamic Contrast-Enhanced Prostate MRI

Peled S., Vangel M., Kikinis R., Tempany C.M., Fennessy F.M., Fedorov A.

Nov-2018

NCIGT, SPL

Acad Radiol. 2018 Nov 19.

Advances in Microstructural Diffusion Neuroimaging for Psychiatric Disorders

Pasternak O., Kelly S., Sydnor V.J., Shenton M.E.

Nov-2018

PNL, NAC, SPL

Neuroimage. 2018 Nov 15;182:259-82.

Investigation into Local White Matter Abnormality in Emotional Processing and Sensorimotor Areas using an Automatically Annotated Fiber Clustering in Major Depressive Disorder

Wu Y., Zhang F., Makris N., Ning Y., Norton I., She S., Peng H., Rathi Y., Feng Y., Wu H., O'Donnell L.J.

Nov-2018

NAC, NCIGT, SPL

Neuroimage. 2018 Nov 1;181:16-29.

Implementing the DICOM Standard for Digital Pathology

Herrmann M., Clunie D.A., Fedorov A., Doyle S.W., Pieper S., Klepeis V., Le L.P., Mutter G.L., Milstone D.S., Schultz T.J., Kikinis R., Kotecha G.K., Hwang D.H., Andriole K.P., Iafrate A.J., Brink J.A., Boland G.W., Dreyer K.J., Michalski M., Golden J.A., Louis D.N., Lennerz J.K.

Nov-2018

NAC, NCIGT, SPL

J Pathol Inform. 2018 Nov 2;9:37.

MR Imaging of the Facial Nerve through the Temporal Bone at 3T with a Noncontrast Ultrashort Echo Time Sequence

Guenette J.P., Seethamraju R.T., Jayender J., Corrales C.E., Lee T.C.

Oct-2018

NCIGT

AJNR Am J Neuroradiol. 2018 Oct;39(10):1903-6.

Evaluation of Robot-assisted MRI-guided Prostate Biopsy: Needle Path Analysis during Clinical Trials

Moreira P., Patel N., Wartenberg M., Li G., Tuncali K., Heffter T., Burdette E.C., Iordachita I., Fischer G.S., Hata N., Tempany C.M.C., Tokuda J.

Oct-2018

NCIGT, SPL

Phys Med Biol. 2018 Oct 16;63(20):20NT02

An Anatomically Curated Fiber Clustering White Matter Atlas for Consistent White Matter Tract Parcellation across the Lifespan

Zhang F., Wu Y., Norton I., Rigolo L., Rathi Y., Makris N., O'Donnell L.J.

Oct-2018

NCIGT, NAC, SPL

Neuroimage. 2018 Oct 1;179:429-47.

Interaction with Volume-Rendered Three-Dimensional Echocardiographic Images in Virtual Reality

Lasso A., Nam H.H., Dinh P.V., Pinter C., Fillion-Robin J-C., Pieper S., Jhaveri S., Vimort J-B., Martin K., Asselin M., McGowan F.X., Kikinis R., Fichtinger G., Jolley M.A.

Oct-2018

SLICER, NAC, NCIGT, SPL

J Am Soc Echocardiogr. 2018 Oct;31(10):1158-60.

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Clinical Image Guidance Laboratory

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